Pubmed Parser
€30-250 EUR
Paid on delivery
There are several tools out there, but none meeting quite the requirements.
I need a scripting tool to extract information from Pubmed Queries (XML).
The tool should be written in Python or if need be in PERL.
It should be able to handle data with more than 100.000 entries.
The required result is a csv-table or txt-table with the following fields:
Article key (int)
Journal (string)
Year of Publication (string: YYYY-MM-DD)
Number of authors (int)
Author last name (string)
Author first name (string)
Author affiliation (string)
Author email (string)
Position of Author in List (int)
First Author position (boolean)
Last Author position (boolean)
The article key is a variable which is unique to the article. DOI or PID may be used for this. The table has to be sorted by author and article. That means that every combination of author and article key is unique within the table!
For every article of the list, the table gets an entry for every author with additional data.
The script has to be fault tolerant to entries with no available entries. The estimated complete data entries is around 20%.
Project ID: #18447437
About the project
12 freelancers are bidding on average €224 for this job
Hello, I'd be glad to develop the pubmed scrapper for you using python. Looking forward to chat with you soon for more details. Best regards,
I can provide you Python script that will execute Pubmed query, parse XML and save it as CSV output. I can complete it in less than two days for just €200. All I need to start is a sample query you want to execute.
Hi, I'm interested to develop a Perl parser for you. can you please send some sample Pubmed XML query Thanks
Hello! I'm ready to make your project with Python +Scrapy framework. This is the most suitable solution for your requirements. Scrapy allows to handle large amounts of data, it easily stores data to csv, etc. Would you More
Hi there, I am interested in the project. I can develop the solution in Python, and it can easily handle the data volume you have mentioned without any problem.
I have been in this field for more than 7 years. i have experience in C#,php,Perl,wordpress,Html,postgress ,Ubuntu,Crontab,Web Services, Rest Api, Zend ,YIi,Mysql. Relevant Skills and Experience so i am right can More
Hi, I have 7 years of experience in perl. I can do it as per requirement. can you please provide sample XML input and sample output for the corresponding input? thanks
Hello, I like solving complicated problems and making the things easier for the other people. In order to achieve this, I have more than 18 years of experience as a IT professional. I have an extraordinary abil More
Hi, I am a certified python programmer. I will provide you the script file in python which will extract the said information and provide you the excel sheet. Thanks, Niraj